Search results for "Setaria viridis"

showing 4 items of 4 documents

Phylogenetic and genomic relationships in Setaria italica and its close relatives based on the molecular diversity and chromosomal organization of 5S…

2001

We have analyzed the phylogenetic and genomic relationships in the genus Setaria Beauv. including diploid and tetraploid species, by means of the molecular diversity of the 5S rDNA spacer and chromosomal organization of the 5S and 18S-5.8S-25S rDNA genes. PCR amplification of the 5S rDNA sequences gave specific patterns. All the species studied here share a common band of about 340 bp. An additional band of an approximately 300-bp repeat unit was found for Setaria verticillata and the Chinese accessions of Setaria italica and Setaria viridis. An additional band of 450 bp was found in the sole species Setaria faberii. Fluorescent in situ hybridization was used for physical mapping of the 5S …

0106 biological sciencesGenetics[SDV.GEN]Life Sciences [q-bio]/Genetics0303 health sciencesSetariaGenetic diversitySetaria verticillataPhylogenetic treeSetaria viridis[SDV.GEN] Life Sciences [q-bio]/GeneticsGeneral MedicineBiologybiology.organism_classification01 natural sciencesGenomeADN RIBOSOMIAL03 medical and health sciencesPhylogeneticsGeneticsAgronomy and Crop ScienceRibosomal DNAComputingMilieux_MISCELLANEOUS030304 developmental biology010606 plant biology & botanyBiotechnologyTheoretical and Applied Genetics
researchProduct

Molecular Bases for Sensitivity to Tubulin-Binding Herbicides in Green Foxtail

2004

Abstract We investigated the molecular bases for resistance to several classes of herbicides that bind tubulins in green foxtail (Setaria viridis L. Beauv.). We identified two α- and two β-tubulin genes in green foxtail. Sequence comparison between resistant and sensitive plants revealed two mutations, a leucine-to-phenylalanine change at position 136 and a threonine-to-isoleucine change at position 239, in the gene encoding α2-tubulin. Association of mutation at position 239 with herbicide resistance was demonstrated using near-isogenic lines derived from interspecific pairings between green foxtail and foxtail millet (Setaria italica L. Beauv.), and herbicide sensitivity bioassays combine…

0106 biological sciencesModels MolecularSetariaPhysiologyProtein ConformationMolecular Sequence DataSetaria PlantDrug ResistancePlant Sciencemedicine.disease_cause01 natural sciencesTubulin binding[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health sciencesFocus Issue on the Plant CytoskeletonSpecies SpecificityTubulin[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants geneticsBotanyGeneticsmedicineBioassayAmino Acid SequenceGeneCross-resistancePhylogenyComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesMutationbiologyBase SequenceSetaria viridisHerbicidesbiology.organism_classificationBiochemistryFoxtail010606 plant biology & botanyProtein Binding
researchProduct

Evaluating field-scale sampling methods for the estimation of mean plant densities of weeds

2000

The weed flora (comprising seven species) of a field continuously grown with soyabean was simulated for 4 years, using semivariograms established from previous field observations. Various sampling methods were applied and compared for accurately estimating mean plant densities, for differing weed species and years. The tested methods were based on (a) random selection wherein samples were chosen either entirely randomly, randomly with at least 10 or 20 m between samples, or randomly after stratifying the field; (b) systematic selection where samples were placed along diagonals or along zig-zagged lines across the field; (c) predicted Setaria viridis (L.) P. Beaux seedling maps which were us…

0106 biological sciencesbiologyEcologySetaria viridisField experimentSampling (statistics)Sample (statistics)04 agricultural and veterinary sciencesPlant Sciencebiology.organism_classification01 natural sciencesKrigingStatistics040103 agronomy & agriculture0401 agriculture forestry and fisheries[SDV.BV]Life Sciences [q-bio]/Vegetal Biology[SDV.BV] Life Sciences [q-bio]/Vegetal BiologyWeedVariogramAgronomy and Crop ScienceEcology Evolution Behavior and SystematicsSelection (genetic algorithm)ComputingMilieux_MISCELLANEOUS010606 plant biology & botanyMathematics
researchProduct

An isoleucine-leucine substitution in chloroplastic acetyl-CoA carboxylase from green foxtail (Setaria viridis L. Beauv.) is responsible for resistan…

2002

The cDNAs encoding chloroplastic acetyl-CoA carboxylase (ACCase, EC 6.4.1.2) from three lines of Setaria viridis (L. Beauv.) resistant or sensitive to sethoxydim, and from one sethoxydim-sensitive line of Setaria italica (L. Beauv.) were cloned and sequenced. Sequence comparison revealed that a single isoleucine-leucine substitution discriminated ACCases from sensitive and resistant lines. Using near-isogenic lines of S. italica derived from interspecific hybridisation, we demonstrated that the transfer of the S. viridis mutant ACCase allele into a sethoxydim-sensitive S. italica line conferred resistance to this herbicide. We confirmed this result using allele-specific polymerase chain rea…

0106 biological sciencesSetariaChloroplastsMutantMolecular Sequence DataDrug ResistancePlant ScienceMolecular cloningPoaceae01 natural sciences[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants geneticsLeucine[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants geneticsGeneticsPoint MutationAmino Acid SequenceIsoleucineComputingMilieux_MISCELLANEOUSAllelesPhylogenyGenes DominantbiologySequence Homology Amino AcidSetaria viridisCyclohexanonesHerbicidesAcetyl-CoA carboxylase04 agricultural and veterinary sciencesbiology.organism_classification3. Good healthPyruvate carboxylaseBiochemistryAmino Acid Substitution040103 agronomy & agriculture0401 agriculture forestry and fisheriesLeucineIsoleucineSequence Alignment010606 plant biology & botanyAcetyl-CoA CarboxylasePlanta
researchProduct